Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015824697.1_cds_XP_016502032.1_15713
CDS Infomation

[gene=LOC107820286] [db_xref=GeneID:107820286] [protein=probable beta-D-xylosidase 5 isoform X2] [protein_id=XP_016502032.1] [location=complement(join(63343..64004,64111..64875,64961..65058,65262..65431,65519..66208))] [gbkey=CDS]
Sequence

ATGGAAAAACATTTTCTACTTTCTCCAATATTCTTCATAGTTCTCTTCACAATACCATGT
AATTCCCAGATTCATGCATGTTATAAGAGTGACCCTAATACCAGCACTTATGGTTTTTGC
AACATTTCTTTAGCTTATACAGACAGAGCAAAAGACTTAGTATCACGGTTAACTCTCCAA
GAAAAAGTGGGACAGCTAGTTAACTCTGCATCAGGCATTCCCAGGCTTGGTGTGCCAGCT
TACGAATGGTGGTCTGAGGCGCTGCACGGGGTGTCAAACACGGGGCCTGGAGTACGTTTC
AATGCAACAGTACCTGGAGCAACCAGTCTCCCAGCTGTCATTCTTTCTGCTGCTAGTTTT
AATGTTTTGTTATGGTATACTTTAGGAAAGGTTGTATCAACTGAGGCTCGGGCCATGCAC
AATGTTGGCCTGGCTGGATTGACCTATTGGAGCCCCAATGTGAATGTCCTTCGTGACCCC
AGATGGGGAAGGGCTCAAGAAACACCAGGGGAGGACCCTCTAGTGGTCTCAAAGTATGCT
GTTAACTATGTCCGAGGCTTGCAAGAAGTCGATGGAGAAGAATATTTCAGCAGTCAAAAC
AAGCTTAAAGTCTCAAGCTGTTGTAAACATTACACTGCTTATGATCTTGATGACTGGAAG
GGAATTGATCGGTATCATTTTGACGCCAATGTGACAGCACAGGATATGGAGGATACATTC
CAGCCACCATTTAAAAGCTGTGTAGAGGAGGGTCATGTTAGCAGTGTGATGTGCTCATAC
AATCGCGTGAATGGAGTTCCAACTTGTGCTGATCCAAATTTGCTCAAAGGAGTGATTAGG
GACCAATGGAGTCTAGACGGATACATTGTCTCTGATTGTGACTCAATTGAAGTTTACTAT
GATGCAATACACTATACTGCCACACCTGAGGATGCAGTCGCCCTTGCTCTGAAAGCAGGT
CTGAACATGAATTGTGGGGATTATCTAGGAAAGTATACAGAAAAAGCAGTGAATCTGAGC
AAGGTGGACGTGTCTATAATTGATCAGTCACTGATATATAACTACATTGTACTAATGAGG
CTTGGATTCTTTGATGGCGATCCAAAAATGCAACCATTTGGAAATCTTGGACCATCTGAT
GTGTGTACCAATGATCATCAGTCCTTGGGAATTGAAGCTGCAAAACAAGGAATAGTTTTG
CTAGACAACAATGGTGTGCTTCCTCTGTCACCAAGCAACGTCAAACACTTGGCTCTTATA
GGTCCCAATGCTAATGCCACTGGGACAATGCTAAGTATCTACGCAGGGGTACCTTGCCGC
TACACCACCCCTTTCCAGGCGATGCAGAAGTATGTAGCGAGCATAACATATGAGCCAGGA
TGTGCAAACGTTCAGTGCACTGATTCAAGCCAAATCAAGGCAGCAGCCAAGGCTGCAGCT
GCAGCCGACGTGGTGGTGCTTGTTATGGGGCTTGATCAATCCATCGAGAGAGAATCACTG
GATAGAGTGAACTTGACATTGCCAGGGTTTCAAGAAAAGCTTGTAAAAGACACCACTAAG
GCAGCAAATGGATCAGTTGTTCTAGTGATTATGTCAGCCAGTCCTATTGATGTAACCTTT
GCTAAGAATAATAAAAAGATCGGCGCAATTTTCTGGGTTGGCTATCCTGGTCAAGATGGC
GGTGATACCATTTCTCAAGTCCTCTTTGGAGATTATAATCCAGGTGGGAGGTCTCCTTTC
ACTTGGTATCCACAAGAATATGTTGACAATGTACCAATGAATGACATGAACATGAGAGCA
AATGCCAGTAGAAACTTTCCTGGAAGAACTTATAGATTCTATAATGGAAAATCAATATAT
CCATTTGGCCATGGACTAAGTTACTCAAGCTTTTCTTCGTTCATCATTTCAGCGCCTTCC
ACCATTGTCGTAAAGCAAAAGACAACCCTTGACTCAGATACCATTCTTTTATCTAACATG
ACTACTCAAGCCAATGGCCAAGCCCTTGATATTTCAAACCTGAATTGCCAGAGTTTAAGG
TTTAACATCACAGTTGGGGTCAAGAATAATGGCAAAATGGATGGATCCTATGTGGTTATA
GTGTTCTGGAAGCCAACAAATATGGGAGGAGGACTGACTGGAGCGCCTAATATCCAGCTG
GTGGGGTTTGAAAGAGTCTGGGTGGAGAAAGGGAAGACAGCAACAGTGACAACAAAATTG
GATGTCTGCAAAGATTTCAGCTTAGCTGATGCATATGGGAAGAGGAAGTTAGTCACAGGG
CTGCAGACTGTAGTTGTTGGTTCTTCAAGTGAGCGCCAAGTTAAGCATCCGTTTAACATT
AGGCTGGCTACAAAAGAAGAATATGGAGCTGTACATTACGTCTAA

Peptide Sequence

PEP ID

XP_016502032.1
PEP Infomation

PREDICTED: probable beta-D-xylosidase 5 isoform X2 [Nicotiana tabacum]
Sequence

MEKHFLLSPIFFIVLFTIPCNSQIHACYKSDPNTSTYGFCNISLAYTDRAKDLVSRLTLQ
EKVGQLVNSASGIPRLGVPAYEWWSEALHGVSNTGPGVRFNATVPGATSLPAVILSAASF
NVLLWYTLGKVVSTEARAMHNVGLAGLTYWSPNVNVLRDPRWGRAQETPGEDPLVVSKYA
VNYVRGLQEVDGEEYFSSQNKLKVSSCCKHYTAYDLDDWKGIDRYHFDANVTAQDMEDTF
QPPFKSCVEEGHVSSVMCSYNRVNGVPTCADPNLLKGVIRDQWSLDGYIVSDCDSIEVYY
DAIHYTATPEDAVALALKAGLNMNCGDYLGKYTEKAVNLSKVDVSIIDQSLIYNYIVLMR
LGFFDGDPKMQPFGNLGPSDVCTNDHQSLGIEAAKQGIVLLDNNGVLPLSPSNVKHLALI
GPNANATGTMLSIYAGVPCRYTTPFQAMQKYVASITYEPGCANVQCTDSSQIKAAAKAAA
AADVVVLVMGLDQSIERESLDRVNLTLPGFQEKLVKDTTKAANGSVVLVIMSASPIDVTF
AKNNKKIGAIFWVGYPGQDGGDTISQVLFGDYNPGGRSPFTWYPQEYVDNVPMNDMNMRA
NASRNFPGRTYRFYNGKSIYPFGHGLSYSSFSSFIISAPSTIVVKQKTTLDSDTILLSNM
TTQANGQALDISNLNCQSLRFNITVGVKNNGKMDGSYVVIVFWKPTNMGGGLTGAPNIQL
VGFERVWVEKGKTATVTTKLDVCKDFSLADAYGKRKLVTGLQTVVVGSSSERQVKHPFNI
RLATKEEYGAVHYV

Transcript Sequence

Gene sequence data has not been registered.